YRC Public Data Repository - Protein Structure Prediction

Protein:	him-3
Organism:	Caenorhabditis elegans
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for him-3.

Description	E-value	Query Range	Subject Range
gi\|12855013 - gi\|12855013\|dbj\|BAB30195.1\| unnamed protein product [Mus musculus]	333.0	[0..16]	[291..8]
HORM1_RAT - HORMA domain-containing protein 1 OS=Rattus norvegicus GN=Hormad1 PE=1 SV=1	330.0	[0..16]	[291..8]
gi\|109016438 - gi\|109016438\|ref\|XP_001106338.1\| PREDICTED: similar to HORMA domain containing 1 [Macaca mulatta]	315.0	[0..19]	[291..16]
HORM1_MACFA - HORMA domain-containing protein 1 OS=Macaca fascicularis GN=HORMAD1 PE=2 SV=1	315.0	[0..12]	[291..3]
HORMAD1 - HORMA domain containing 1	314.0	[0..12]	[291..3]
gi\|86437968, gi\|... - gi\|86437968\|gb\|AAI12461.1\| HORMA domain containing 1 [Bos taurus], gi\|114052685\|ref\|NP_001039770.1\| ...	308.0	[0..12]	[290..3]
gi\|73981556 - gi\|73981556\|ref\|XP_533048.2\| PREDICTED: similar to HORMA domain containing 1 [Canis familiaris]	307.0	[0..12]	[291..3]
gi\|39592201, gi\|... - gi\|39592201\|emb\|CAE75422.1\| Hypothetical protein CBG23415 [Caenorhabditis briggsae], gi\|187021030\|em... gi\|157762488 - gi\|157762488\|ref\|XP_001673586.1\| Hypothetical protein CBG23415 [Caenorhabditis briggsae AF16]	302.0	[0..3]	[290..15]

Back

Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKEQIVEH RESEIPIASQ WKATFPVDLE IEKNSEMFAL RYIKCASAFI LDRRGILDEK  60
   61 CFKTRTIDKL LVTAFQSSVP AAKRVSSTFD GLRDAIQQGY LREFAIVFYK KPNEEDINEV 120
  121 FAFRFAYGDE GEIFVSLNNG IDTNESSQEL LQAKFVDTDN TKQMFASTIK KLHRCIKKME 180
  181 PLPQGSDASF RVSYTEKAPK DYTPEGYLLS PMFYTLNQDI RKASIGIVCG GHHKIQMLAA 240
  241 SQYLKQDFDL DKTTTLNPNM SIMANQSKRK GRISRDSPYG LSQGITKKNK D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.79
Match:	1s2hA
Description:	The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.643047718552136	bayes_pls_golite062009
protein binding	0.123037566638484	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: