YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE07537
Organism: Caenorhabditis elegans
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07537.

Description E-value Query
Range
Subject
Range
CNN3_BOVIN - Calponin-3 OS=Bos taurus GN=CNN3 PE=2 SV=1
321.0 [0..44] [382..1]

Back

Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVEDEYED EEEIEEDEPV ADENQEPEAE EPEAEEEAPA PAAASPRAAA PPASLKSPTP  60
   61 GRQQVNFTPS IPQSVLRKQQ NYSSGKPSTI HTKEKLMRSE GIIPIQAGSN KYASQKGMTG 120
  121 FGVPRDVIDK VKSDNLAEIT DEKKIANLKG STWLQSGTNK FASQKGQSGF GAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.09691
Match: 1wypA
Description: Solution structure of the CH domain of human Calponin 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [174-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDVNYKTKGT GGASEVPEEK ARASDGIVPL QSGTNKLASQ AGMTGIGMPR IVDVRRTNDQ  60
   61 DRDSQGFIHL QMGTNKFANQ AGMTGFGMPR HNITKY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [270-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDEVRGDMPH DEGTLSRQTS GWKEGASQAG MTGFGAFRNN TVAFMQAQDQ RSQGMIPYQM  60
   61 GVNFLESQAG KTGFGQPRQV YTPFTDDTHE DLPADIARRP DVPFWTGQKE ADHANQTGMT 120
  121 AFGTPRDVRG EYVRRMW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle