YRC Public Data Repository - Protein Structure Prediction

Protein:	cri-2
Organism:	Caenorhabditis elegans
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cri-2.

Description	E-value	Query Range	Subject Range
gi\|74354677, gi\|... - gi\|75832065\|ref\|NP_776897.2\| TIMP metallopeptidase inhibitor 2 [Bos taurus], gi\|74354677\|gb\|AAI02711...	212.0	[0..2]	[158..8]
TIMP2_MOUSE - Metalloproteinase inhibitor 2 OS=Mus musculus GN=Timp2 PE=1 SV=2	209.0	[0..15]	[158..21]
TIMP2 - TIMP metallopeptidase inhibitor 2	208.0	[0..17]	[158..23]
TIMP2_RAT - Metalloproteinase inhibitor 2 OS=Rattus norvegicus GN=Timp2 PE=1 SV=3 gi\|619233, gi\|21... - gi\|619233\|gb\|AAC60687.1\| tissue inhibitor of metalloproteinase type 2; TIMP-2 [Rattus sp.], gi\|21184... gi\|31543867, gi\|... - gi\|31543867\|ref\|NP_035724.2\| TIMP metallopeptidase inhibitor 2 [Mus musculus], gi\|29165745\|gb\|AAH491...	208.0	[0..17]	[158..23]
TIMP2_CANLF - Metalloproteinase inhibitor 2 OS=Canis lupus familiaris GN=TIMP2 PE=2 SV=2	208.0	[0..15]	[158..21]
TIMP2_CAVPO - Metalloproteinase inhibitor 2 OS=Cavia porcellus GN=TIMP2 PE=2 SV=1	206.0	[0..18]	[158..24]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLSLSLVI LSVLIAVTLA CKCREQSTKE SFCNAHWVSH VKVKVRVGKQ GLPEGSERKG  60
   61 LNNLRYTVQH VEVFKKPSNM TTLPDEIFTP SEAPACGLKI AAGHEYLLAG RVEGPNALYT 120
  121 VLCGQVLPDD RSQTSFENVL EWKNVPQTLQ SQVKSIKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1br9A
Description:	HUMAN TISSUE INHIBITOR OF METALLOPROTEINASE-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits