YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE07304
Organism: Caenorhabditis elegans
Length: 667 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07304.

Description E-value Query
Range
Subject
Range
gi|66063, gi|206... - gi|93279231|pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With 3-Oh- Dodecanoa...
521.0 [0..4] [667..3]

Back

Predicted Domain #1
Region A:
Residues: [1-667]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPLIDKYR KMATFDWKKL KAAVEGEEHV RLKSEVVAKM KSEPVFHRDY RVLSREEQRE  60
   61 VVHQRWKKIV EWGLFKDPYS DLENFHALTE TLEAYDQGTS ARLFLHGNVF GAAVKSMGTD 120
  121 RHKDLIQKTE NNEIVGAFCL TEVGHGSNTA EIQTTATFDN GELVFNTPSV SAIKCWAGNL 180
  181 AHSATHVVVY AQLHVEGKNE GFHGFVIQVR CPRTFQTLPG ITIGDMGSKP GCWQGVENGW 240
  241 MEFKNHRAPL SALLNKGCDI TPDGKYVTSF KSASEKQSVS LGTLSVGRLG IIAKGMMACT 300
  301 FASTIAIRYS VARRQFGPVK GAENEIPVLE YPLQQYRLFP YLSAAICIRI FQKKFVGHFT 360
  361 EYMMRVIMGE KSDELSEFSK EVHALSSGAK PVATWLGVES LGEARKACGG HGYLQMSRLN 420
  421 TLRDDNDPSQ TFEGENFMIL QQTSNILLGK AQSIGSIETP MSTMSFLNQK PSKFSSWSSN 480
  481 PVNDVLSAYR YLTYHLLQTT SAEAYRLKAS GKNSFEVRNE IQIHRAVNLS VAYTEHTMIH 540
  541 WVQQFLKEIE DQSVKPVLQK VLNLFSLFLL ERHLATLYIT GYASGGKFGE DLREKLRLAV 600
  601 AELKPEAIAL VDSIAPDDFI LHSALGASDG KAYEHIMEEF RKYTNEQPRW VCDLAQFLQK 660
  661 RSQGSKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.0
Match: 1is2A
Description: Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
acyl-CoA oxidase activity 7.85164875699474 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 7.69964776555327 bayes_pls_golite062009
acyl-CoA dehydrogenase activity 6.0252876667118 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 5.50948952617422 bayes_pls_golite062009
palmitoyl-CoA oxidase activity 5.41720462605663 bayes_pls_golite062009
oxidoreductase activity 3.99827953439804 bayes_pls_golite062009
catalytic activity 2.41506805547596 bayes_pls_golite062009
pristanoyl-CoA oxidase activity 2.26651221125135 bayes_pls_golite062009
binding 0.749242681954192 bayes_pls_golite062009
protein binding 0.269787458920778 bayes_pls_golite062009
long-chain-acyl-CoA dehydrogenase activity 0.13696326544237 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle