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View Structure Prediction Details

Protein: wrt-2
Organism: Caenorhabditis elegans
Length: 454 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wrt-2.

Description E-value Query
Range
Subject
Range
wrt-7 - Hint module status:Partially_confirmed UniProt:O45992 protein_id:CAB03509.2
308.0 [0..5] [260..10]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTPIIFLLA LVPVALASYC GQSAIPYTFQ VLRSGYPVLG CARPKCFGWT ANGTRAGETA  60
   61 QFYRVAGKDD GYLRRSDQFI KSPSKNPNFV PQLAICTDEY KSKTCEEGEW VGGLSPQSDP 120
  121 FADQLEMKCC SYQVLISAED RGNAIVKQGQ LVVGGEVLDG SRLVAFDYIS NLSKSVSENG 180
  181 TVVYVASIKR MPCFDEEQAV ENKKRENTIV EAAAVVEQPA TTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASSVVTHQP SVTVPQQGAP LNIQPYAPQQ QQVQQPAQVA YPGVVNPATN YGQFSQQAYG  60
   61 VAQNGQYSGY PQYAQQQPQP QYYQDPFAAM LQQQHQAFQQ QVYANQQQQQ QQMQQQQQQQ 120
  121 QAQPQQQQQP AQPQQQLGFA PLPQFPQPMM FQAPQVVAQP GVAAAAGVPQ MPIGALPQMP 180
  181 VQMTSTLPPM TLPKLEDLPK LQIPSVEDVE QVIPPVQRAI LTSVAKFFGV L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.09691
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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