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View Structure Prediction Details

Protein: wrt-2
Organism: Caenorhabditis elegans
Length: 454 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wrt-2.

Description E-value Query
Range
Subject
Range
wrt-7 - Hint module status:Partially_confirmed UniProt:O45992 protein_id:CAB03509.2
308.0 [0..5] [260..10]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTPIIFLLA LVPVALASYC GQSAIPYTFQ VLRSGYPVLG CARPKCFGWT ANGTRAGETA  60
   61 QFYRVAGKDD GYLRRSDQFI KSPSKNPNFV PQLAICTDEY KSKTCEEGEW VGGLSPQSDP 120
  121 FADQLEMKCC SYQVLISAED RGNAIVKQGQ LVVGGEVLDG SRLVAFDYIS NLSKSVSENG 180
  181 TVVYVASIKR MPCFDEEQAV ENKKRENTIV EAAAVVEQPA TTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASSVVTHQP SVTVPQQGAP LNIQPYAPQQ QQVQQPAQVA YPGVVNPATN YGQFSQQAYG  60
   61 VAQNGQYSGY PQYAQQQPQP QYYQDPFAAM LQQQHQAFQQ QVYANQQQQQ QQMQQQQQQQ 120
  121 QAQPQQQQQP AQPQQQLGFA PLPQFPQPMM FQAPQVVAQP GVAAAAGVPQ MPIGALPQMP 180
  181 VQMTSTLPPM TLPKLEDLPK LQIPSVEDVE QVIPPVQRAI LTSVAKFFGV L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.09691
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle