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View Structure Prediction Details

Protein: CE06783
Organism: Caenorhabditis elegans
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06783.

Description E-value Query
Range
Subject
Range
gi|157758801 - gi|157758801|ref|XP_001671744.1| Hypothetical protein CBG03509 [Caenorhabditis briggsae AF16]
gi|39581262, gi|... - gi|39581262|emb|CAE60008.1| Hypothetical protein CBG03509 [Caenorhabditis briggsae], gi|187036540|em...
229.0 [0..2] [198..73]
CE24068 - status:Confirmed UniProt:Q9NAM2 protein_id:CAB54365.1
181.0 [0..96] [205..180]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSIAKLFD PKRRRVEEEK PEDDDRLQAQ KVKLTEPEDF AHTGNLTVNQ DVKLEKPEEV  60
   61 RRPTKAEEAS TVVLLDSSST SSSSSSSNQN MRST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEPTKSRPEL TRDGMWSPLG FAKTFLYDYE RGVPFDRETC EENIKILQRE DRDVDYREFL  60
   61 TMAEKFNEEG QSLWARACVN MAASTHQMNE NLRKIRQLER TETDQASSSQ S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.842 N/A N/A a.247.1 Description not found.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle