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View Structure Prediction Details

Protein: valv-1
Organism: Caenorhabditis elegans
Length: 84 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for valv-1.

Description E-value Query
Range		 Subject
Range
LHX1_XENLA - LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
 109.0 [0..1] [82..1]
LHX1_DANRE - LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
 107.0 [0..1] [82..1]
gi|76639272 - gi|76639272|ref|XP_878472.1| PREDICTED: similar to LIM homeobox protein 5 isoform 2 [Bos taurus]
 106.0 [0..1] [82..1]
gi|73966852 - gi|73966852|ref|XP_852897.1| PREDICTED: similar to LIM homeobox protein 1 [Canis familiaris]
 106.0 [0..1] [82..59]
LHX1 - LIM homeobox 1
 106.0 [0..1] [82..1]
LHX1_RAT - LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=1 SV=1
LHX1_MOUSE - LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
gi|2144068, gi|5... - gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.], gi|2144068|pir||I58187 homeotic protein ...
LHX1_MESAU - LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2 SV=1
 106.0 [0..1] [82..1]
LHX1_PANTR - LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
LHX1_SAIBB - LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis GN=LHX1 PE=2 SV=1
tr|M3W3F7|M3W3F7... - LIM homeobox 1 OS=Felis catus GN=LHX1 PE=4 SV=1
gi|56122252 - gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
 106.0 [0..1] [82..1]
LHX1_CHICK - LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
 106.0 [0..1] [82..1]

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Predicted Domain #1
Region A:
Residues: [1-84] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNCPNCQKP VYFAERVSSL GKDWHRPCLK CANKACGKTL SAGSHSEHEG KPYCNRCYGA  60
   61 LFGPKGYGHG GTESHTFLQG TTGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1imlA
Description: CYSTEINE RICH INTESTINAL PROTEIN, NMR, 48 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.12572817427544 bayes_pls_golite062009
protein binding 1.29473277650963 bayes_pls_golite062009
transcription regulator activity 0.926096863093835 bayes_pls_golite062009
DNA binding 0.783411216409999 bayes_pls_golite062009
nucleic acid binding 0.65930197973104 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 0.622294453146392 bayes_pls_golite062009
transcription factor activity 0.212488086680491 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle