| Protein: | skp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 535 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
518.0 | [0..3] | [535..63] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MSMKLRDILP APVAADEAAS QIRRDPWFGG RDNEPSAALV SKEPPPYGKR TSFRPRGPED 60
61 FGDGGAFPEI HVAQFPLGLG LGDMRGKPEN TLALQYGTDG KLQHDAIARI GHVKDKVVYS 120
121 KLNDMKAKTW NE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [133-408] |
1 11 21 31 41 51
| | | | | |
1 DDDDIQKPDD DAVIDATEKT RMALEKIVNS KVASALPVRH ADKLAPAQYI RYTPSQQNGA 60
61 AGSQQRIIRM VEEQKDPMEP PKFKINQKIP RAPPSPPAPV MHSPPRKMTA KDQNDWKIPP 120
121 CISNWKNPKG FTVGLDKRLA ADGRGLQQTH INENFAKLAD ALYIADRKAR EEVETRAQLE 180
181 RRVAQNKKSE QEAKMAEAAA KARQERSAMR RKDDEDDEQV KVREEIRRDR LDDIRKERNI 240
241 ARSRPDKADK LRKERERDIS EKIVLGLPDT NQKRTG
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [409-535] |
1 11 21 31 41 51
| | | | | |
1 EPQFDQRLFD KTQGLDSGAM DDDTYNPYDA AWRGGDSVQQ HVYRPSKNLD NDVYGGDLDK 60
61 IIEQKNRFVA DKGFSGAEGS SRGSGPVQFE KDQDVFGLSS LFEHTKEKKR GGDGGDSRGE 120
121 SKRSRRD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
