YRC Public Data Repository - Protein Structure Prediction

Protein:	acl-2
Organism:	Caenorhabditis elegans
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-2.

Description	E-value	Query Range	Subject Range
gi\|157765502 - gi\|157765502\|ref\|XP_001675094.1\| Hypothetical protein CBG04832 [Caenorhabditis briggsae AF16] gi\|39590084, gi\|... - gi\|39590084\|emb\|CAE61082.1\| Hypothetical protein CBG04832 [Caenorhabditis briggsae], gi\|187035586\|em...	214.0	[0..1]	[280..1]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	195.0	[0..27]	[272..2]
gi\|2564952, gi\|2... - gi\|2564952\|gb\|AAB82009.1\| lysophatidic acid acyl transferase-alpha [Mus musculus], gi\|254281343\|ref\|...	192.0	[0..4]	[263..7]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	191.0	[0..29]	[268..4]
gi\|50758008 - gi\|50758008\|ref\|XP_415716.1\| PREDICTED: similar to Myeloperoxidase precursor (MPO) [Gallus gallus]	189.0	[0..15]	[261..869]
gi\|55249755, gi\|... - gi\|55249755\|gb\|AAH85852.1\| 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acy...	189.0	[0..4]	[263..7]
gi\|12720314, gi\|... - gi\|15601968\|ref\|NP_245040.1\| hypothetical protein PM0103 [Pasteurella multocida subsp. multocida str...	188.0	[0..29]	[268..4]
gi\|1841552 - gi\|1841552\|gb\|AAB47493.1\| LPAAT [Homo sapiens]	188.0	[0..17]	[263..15]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFWSIVVF FLLSILFILY NISTVCHYYM RISFYYFTIL LHGMEVCVTM IPSWLNGKGA  60
   61 DYVFHSFF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YWCKWTGVHT TVYGYEKTQV EGPAVVICNH QSSLDILSMA SIWPKNCVVM MKRILAYVPF  60
   61 FNLGAYFSNT IFIDRYNRER AMASVDYCAS EMKNRNLKLW VFPEGTRNRE GGFIPFKKGA 120
  121 FNIAVRAQIP IIPVVFSDYR DFYSKPGRYF KNDGEVVIRV LDAIPTKGLT LDDVSELSDM 180
  181 CRDVMLAAYK EVTLEAQQRN ATRRGETKDG KKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits