YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE06216
Organism: Caenorhabditis elegans
Length: 347 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06216.

Description E-value Query
Range
Subject
Range
gi|54308673, gi|... - gi|54308673|ref|YP_129693.1| putative alcohol dehydrogenase class III [Photobacterium profundum SS9]...
333.0 [0..3] [346..6]

Back

Predicted Domain #1
Region A:
Residues: [1-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNLSAVL YGINDLRLEQ APISKPGPRQ VLVKINTVGI CGSDVHFLTH GAIGSFVVKE  60
   61 PMVLGHESSG VVSEIGSEVK GFKVGDRIAM EPGLPCKLCE HCKIGRYNLC PDMRFFATPP 120
  121 VNGALSRFVV HDADFCFKLP DNLSFEDGAL LEPLSVAIQA CRRGTVQMGQ KILVLGAGPI 180
  181 GVLNLLTAKA IGASKVVITD LNDERLALAR LLGADATINV MGKRSDEVRS EIIKAFGDQQ 240
  241 PHVSIECTGV QPCVETAIMT TRSGGVVVLV GLGAERVEIP LIQSPTREVD LRGTFRSANC 300
  301 YSTAIELISS GKLDLSGLTR AHYKLEESLE AFKRTQNGDV IKVFIHC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.0
Match: 1pl6A
Description: Human SDH/NADH/inhibitor complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-iditol 2-dehydrogenase activity 3.00103406168296 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 2.94416173750168 bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent 2.26153457113968 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity 1.69771604880532 bayes_pls_golite062009
chaperone binding 0.484522928331397 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.418775403210681 bayes_pls_golite062009
transmembrane transporter activity 0.418142370391682 bayes_pls_golite062009
NAD or NADH binding 0.39817482511246 bayes_pls_golite062009
L-arabinitol 2-dehydrogenase activity 0.382131941157781 bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity 0.36426941921419 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity 0.361275519814065 bayes_pls_golite062009
coenzyme binding 0.35922330382799 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.32207755075663 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase activity 0.298691872199351 bayes_pls_golite062009
ATPase activity 0.275256680720412 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle