YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE06040
Organism: Caenorhabditis elegans
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06040.

Description E-value Query
Range
Subject
Range
gi|157762394 - gi|157762394|ref|XP_001673539.1| Hypothetical protein CBG23469 [Caenorhabditis briggsae AF16]
gi|187020983, gi... - gi|39592248|emb|CAE75469.1| Hypothetical protein CBG23469 [Caenorhabditis briggsae], gi|187020983|em...
367.0 [0..2] [313..3]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITSMPYNRL REAILHKRKL SKHILVAMVL ISSMLLLINI MQDSNEEGDD VPVEGTPTFK  60
   61 AFYNCVYPKL ASLRGNYEMF WTSFVNLTKE CDGLEEYKAL DIQPVANTDE VKYVAFPKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DENITMVTLG IGHDVDAEMR LKKLWPKTEF FGVDPSPEIN KDLYEVKLGG NYFQIAVSGK  60
   61 GGMQKSYIFR KEYRDEATMH IGADYFFGDM LQKPRVDILW MDTEGNEFPV LDMIHRGGPL 120
  121 DQRGVTICQM NIEIHKDLMK DITGEREKFH DFVWKLLADK KYIMVKPFYV YWFHQFIRTV 180
  181 IINVADPECT NLYMN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 2py6A
Description: No description for 2py6A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle