YRC Public Data Repository - Protein Structure Prediction

Protein:	lys-6
Organism:	Caenorhabditis elegans
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys-6.

Description	E-value	Query Range	Subject Range
lys-4 - status:Confirmed UniProt:Q20964 protein_id:CAA97797.1	235.0	[0..1]	[214..1]
gi\|39593796, gi\|... - gi\|39593796\|emb\|CAE62089.1\| Hypothetical protein CBG06114 [Caenorhabditis briggsae], gi\|187034448\|em... gi\|157755803 - gi\|157755803\|ref\|XP_001670245.1\| Hypothetical protein CBG06114 [Caenorhabditis briggsae AF16]	226.0	[0..1]	[214..1]
gi\|110632992, gi... - gi\|110632992\|ref\|YP_673200.1\| glycoside hydrolase family protein [Mesorhizobium sp. BNC1], gi\|110283...	200.0	[0..8]	[213..119]
LYSG2_DICDI - Probable GH family 25 lysozyme 2 OS=Dictyostelium discoideum GN=DDB_G0274181 PE=3 SV=1 gi\|66821683, gi\|... - gi\|66821683\|ref\|XP_644284.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60472030\|gb\|EAL...	200.0	[0..3]	[214..6]
gi\|23500234, gi\|... - gi\|23500234\|ref\|NP_699674.1\| glycosy hydrolase family protein [Brucella suis 1330], gi\|23463839\|gb\|A...	198.0	[0..8]	[213..114]
gi\|25503473 - pir\|\|F95925 probable cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein (EC... gi\|15140555, gi\|... - gi\|16264418\|ref\|NP_437210.1\| putative cell-wall lytic enzyme, muramidase (lysozyme) protein [Sinorhi...	195.0	[0..17]	[213..130]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLVSTLIL ISAVSAVRNG IDFIQPVSVA TFTCVKNAGY SFVIPRVFTS VGTVDHTGIQ  60
   61 NVANARAAGL TDVDGYIFPC LKSTCASAAN QVKASLDAVK AAGTKISTLW LDIERLNWPA 120
  121 DHASNRAFIE AMVSEAKAYG QQVGIYSNYY NWQDIVGLDY HGQSSLMLWW AAYDGVKDFS 180
  181 KFAAFGGWSS PTIHQWEGTT AGPCGVSVDM NYVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1jfxA
Description:	Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32563207632796	bayes_pls_golite062009
hydrolase activity	0.85514037342026	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.80912338090552	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.41375210927547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: