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View Structure Prediction Details

Protein: sdn-1
Organism: Caenorhabditis elegans
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdn-1.

Description E-value Query
Range
Subject
Range
gi|114654191 - gi|114654191|ref|XP_001166150.1| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes]
129.0 [0..22] [287..1318]
sdn-1 - syndecan like protein status:Confirmed UniProt:Q8I4H9 protein_id:CAD44142.1
117.0 [0..1] [288..1]
gi|27881490, gi|... - gi|27881490|ref|NP_775080.1| zonadhesin isoform 4 [Homo sapiens], gi|12667416|gb|AAK01434.1|AF332978...
112.0 [0..2] [230..553]
NRX1A_RAT, NX1A_RAT - (Q63372) Neurexin 1-alpha precursor (Neurexin I-alpha), (Q63372) Neurexin-1-alpha precursor (Neurexi...
105.0 [0..106] [287..1336]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILKLNFCLS TYSVLILLSL STQAFAANQA KTKVVPSSTI STKSLKNGIS EQVEGSANIP  60
   61 GRLADIEVNG SGYPTDDEDG DDVHGSGKPP SSATTKSDKV TSPSHAVVTA KPTTVPTTTA 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.416 N/A N/A a.60.9 lambda integrase-like, N-terminal domain

Predicted Domain #2
Region A:
Residues: [122-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKPPVQPKPK PAANDKEIKV EEDEDDDEDE DEDDEDDEED FADENIHNDE DFFTTTTTTT  60
   61 YRPIVVATTS TPRSAATNPP RQQPPMVTST ISSGPFSPFH ETLANGFYAA IAGGVLVAVI 120
  121 TAILLVLFVV FRIRKKDEGS YALDEPKQAR PYASYGYTKA STKEFYA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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