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View Structure Prediction Details

Protein: col-126
Organism: Caenorhabditis elegans
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-126.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
258.0 [0..42] [309..1372]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKRKEIQE KRYHFDMEKI LVTISTGAAS IAVLAVLFTV PSLYNTINEV HDQVLDGVSV  60
   61 FRVETDSAWT EMMDIQVTVT PPTKPRVNPF NSVFRQKRQT FSGLPAWCQC EPTKPTCPPG 120
  121 PPGPPGQPGA PGVPGAPGPR GGDSTVTYAP INCPQVSFDC IKCPAGPAGP AGSSGPAGPA 180
  181 GPSGQPGTPG QRGNDGFPGA PGAPGDNGQP GFPGQDGAPG QPGADGQRGA GTPGAPGAPG 240
  241 NAGPAGPSGQ DGFPGQDGAP GSAGPAGQDG FPGNNGSDGQ PGAPGGPGLP GNDAAYCACP 300
  301 PRSAVFLSRH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.09691
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle