YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-9
Organism:	Caenorhabditis elegans
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-9.

Description	E-value	Query Range	Subject Range
gi\|125977174, gi... - gi\|54641368\|gb\|EAL30118.1\| GA17431-PA [Drosophila pseudoobscura], gi\|125977174\|ref\|XP_001352620.1\| G...	207.0	[0..2]	[180..4]
gi\|67035698 - gi\|67035698\|gb\|AAY62780.1\| small ribosomal protein subunit 4 [Dryptodon patens]	204.0	[0..12]	[184..1]
gi\|77019151 - gi\|77019151\|emb\|CAH60181.1\| chloroplast 30S ribosomal protein S4 [Grimmia austrofunalis]	203.0	[0..12]	[184..1]
gi\|63101091 - gi\|63101091\|gb\|AAY33170.1\| small ribosomal protein 4 [Platyneuron laticostatum]	203.0	[0..10]	[184..2]
gi\|29422405 - gi\|29422405\|gb\|AAO84598.1\| small ribosomal protein 4 [Breutelia chrysocoma]	203.0	[0..12]	[184..2]
gi\|33413247 - gi\|33413247\|emb\|CAD86758.1\| ribosomal protein small subunit 4 [Micromitrium tenerum]	203.0	[0..27]	[184..9]
gi\|67035706 - gi\|67035706\|gb\|AAY62784.1\| small ribosomal protein subunit 4 [Racomitrium crispipilum]	202.0	[0..12]	[184..1]
gi\|46486574 - gi\|46486574\|gb\|AAS98723.1\| ribosomal protein subunit 4 [Hypnodendron diversifolium]	202.0	[0..12]	[184..1]
gi\|63191647 - gi\|63191647\|gb\|AAY34785.1\| small ribosomal protein subunit 4 [Leskeadelphus bolivianus]	202.0	[0..12]	[184..1]
gi\|18920743 - gi\|18920743\|gb\|AAL82416.1\| ribosomal protein system 4 [Herzogiella striatella]	202.0	[0..25]	[184..2]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLKTVQSK VTKSPRRPFE KERLDQELKL IGTFGLKNKR EVWRVKYTLA KVRKAARELL  60
   61 TLEDKDPKRL FEGNALLRRL VKIGVLDETK MKLDYVLGLK VEDFLERRLQ TQVFKLGLAK 120
  121 SIHHARILIK QHHIRVRRQV VDVPSFIVRL DSQKHIDFSL QSPYGGGRPG RVKRRTLRKG 180
  181 DGAGGDDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1s1hD
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits