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View Structure Prediction Details

Protein: gi|7500120, gi|1...
Organism: Caenorhabditis elegans
Length: 232 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7500120, gi|1....

Description E-value Query
Range
Subject
Range
CE36142 - status:Partially_confirmed UniProt:Q19892 protein_id:CAA96637.2
309.0 [0..1] [232..1]
gi|157768314 - gi|157768314|ref|XP_001675978.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae AF16]
gi|39594751, gi|... - gi|39594751|emb|CAE70619.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae], gi|187025807|em...
296.0 [0..1] [231..2]
HSP6_HETGL - Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1
293.0 [0..3] [232..4]
gi|52783796 - gi|52783796|sp|P62341|SELT_HUMAN Selenoprotein T precursor
277.0 [0..83] [230..36]
SELT_MOUSE - Selenoprotein T precursor - Mus musculus (Mouse)
SELT_RAT - Selenoprotein T precursor - Rattus norvegicus (Rat)
276.0 [0..83] [230..36]
SELT_CHICK - Selenoprotein T precursor - Gallus gallus (Chicken)
275.0 [0..83] [230..40]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSGAIIIG LFFIASIFDV FRAEKEPPAE DSRLEDYLSS ELETTAIPTV VNENSHSQDV  60
   61 VDSGFSKDLP KLTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYWFVFWIFL NINLTIVFSV SCGYKQAFNQ FYEFAKEKYP GLVIEGGNFS PDFWKGCLAQ  60
   61 IVGVAKIGLI AIVITGSNPF EYIGFGYPQI LQTAHYNRFS YSLLVFMIGN LFESTLSSTG 120
  121 AFEIFLGDKQ IWSKISKERV PTQEEFLNLI DLQLKTIR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.19
Match: 2okaA
Description: No description for 2okaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle