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View Structure Prediction Details

Protein: gi|7500120, gi|1...
Organism: Caenorhabditis elegans
Length: 232 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7500120, gi|1....

Description E-value Query
Range
Subject
Range
CE36142 - status:Partially_confirmed UniProt:Q19892 protein_id:CAA96637.2
309.0 [0..1] [232..1]
gi|157768314 - gi|157768314|ref|XP_001675978.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae AF16]
gi|39594751, gi|... - gi|39594751|emb|CAE70619.1| Hypothetical protein CBG17303 [Caenorhabditis briggsae], gi|187025807|em...
296.0 [0..1] [231..2]
HSP6_HETGL - Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1
293.0 [0..3] [232..4]
gi|52783796 - gi|52783796|sp|P62341|SELT_HUMAN Selenoprotein T precursor
277.0 [0..83] [230..36]
SELT_MOUSE - Selenoprotein T precursor - Mus musculus (Mouse)
SELT_RAT - Selenoprotein T precursor - Rattus norvegicus (Rat)
276.0 [0..83] [230..36]
SELT_CHICK - Selenoprotein T precursor - Gallus gallus (Chicken)
275.0 [0..83] [230..40]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSGAIIIG LFFIASIFDV FRAEKEPPAE DSRLEDYLSS ELETTAIPTV VNENSHSQDV  60
   61 VDSGFSKDLP KLTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYWFVFWIFL NINLTIVFSV SCGYKQAFNQ FYEFAKEKYP GLVIEGGNFS PDFWKGCLAQ  60
   61 IVGVAKIGLI AIVITGSNPF EYIGFGYPQI LQTAHYNRFS YSLLVFMIGN LFESTLSSTG 120
  121 AFEIFLGDKQ IWSKISKERV PTQEEFLNLI DLQLKTIR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.19
Match: 2okaA
Description: No description for 2okaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle