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View Structure Prediction Details

Protein: CE05728
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05728.

Description E-value Query
Range
Subject
Range
gi|157757011 - gi|157757011|ref|XP_001670849.1| Hypothetical protein CBG03454 [Caenorhabditis briggsae AF16]
gi|39585762, gi|... - gi|39585762|emb|CAE59964.1| Hypothetical protein CBG03454 [Caenorhabditis briggsae], gi|187036672|em...
352.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEETIKVEN LDDSITIDRN PVPLAFCARP TLPAKIGMKT EDGIVDQLLD LVDPITVVNP  60
   61 TEIRQAPSLK SFGCDTESEF EFSGDDSDFE NINDLRAGAL DSDEEFDRLV KFSAKIIEKT 120
  121 HKSEYPDENG KKQRKPKKSQ KTRNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEYDDMPPLE NLSIECKGQL LEFGFVSKVV DCQVVIISTC TEVLDFDSFL FDQKGNALGQ  60
   61 IYDIFGQVKN PQYVIRFNSC EEASMIPIDM KVYYAPTEEQ FSKTPFKGLN L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 2v3mA
Description: No description for 2v3mA was found.

Predicted Domain #3
Region A:
Residues: [257-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAANRDAIKS LNRRIDHQEA VAKAGETMAQ VGIGSDVEFS DDEAEKEFKR TTYTQPASQM  60
   61 SRGFDSNRGR KRDRRGGQKV RFSAQNPPAR SDNLGPIPQQ PSAPPPPARP AQSTESNPYA 120
  121 EFGCHSGFNG RFGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle