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View Structure Prediction Details

Protein: CE05728
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05728.

Description E-value Query
Range
Subject
Range
gi|157757011 - gi|157757011|ref|XP_001670849.1| Hypothetical protein CBG03454 [Caenorhabditis briggsae AF16]
gi|39585762, gi|... - gi|39585762|emb|CAE59964.1| Hypothetical protein CBG03454 [Caenorhabditis briggsae], gi|187036672|em...
352.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEETIKVEN LDDSITIDRN PVPLAFCARP TLPAKIGMKT EDGIVDQLLD LVDPITVVNP  60
   61 TEIRQAPSLK SFGCDTESEF EFSGDDSDFE NINDLRAGAL DSDEEFDRLV KFSAKIIEKT 120
  121 HKSEYPDENG KKQRKPKKSQ KTRNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEYDDMPPLE NLSIECKGQL LEFGFVSKVV DCQVVIISTC TEVLDFDSFL FDQKGNALGQ  60
   61 IYDIFGQVKN PQYVIRFNSC EEASMIPIDM KVYYAPTEEQ FSKTPFKGLN L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 2v3mA
Description: No description for 2v3mA was found.

Predicted Domain #3
Region A:
Residues: [257-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAANRDAIKS LNRRIDHQEA VAKAGETMAQ VGIGSDVEFS DDEAEKEFKR TTYTQPASQM  60
   61 SRGFDSNRGR KRDRRGGQKV RFSAQNPPAR SDNLGPIPQQ PSAPPPPARP AQSTESNPYA 120
  121 EFGCHSGFNG RFGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle