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View Structure Prediction Details

Protein: inx-10
Organism: Caenorhabditis elegans
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-10.

Description E-value Query
Range
Subject
Range
gi|157764498 - gi|157764498|ref|XP_001674592.1| Hypothetical protein CBG19227 [Caenorhabditis briggsae AF16]
gi|39594553, gi|... - gi|39594553|emb|CAE72131.1| Hypothetical protein CBG19227 [Caenorhabditis briggsae], gi|187024470|em...
612.0 [0..1] [559..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLAAVLSML RYVGGSDDRD FVDRLHSYFT CNLLIGLAVL VSFKQFGGKP VECLVPDIFS  60
   61 SSWEQYAENY CWASDTYYVP TNEPVAGLQS DEKRQRKISY YQWVPFFLLL EAACFRLPSL 120
  121 LWKYLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHSGIKINEI VKLSSDPNNI KPDIKRANIK SLTVHLQGAL RFHRRLQKKQ IRPHRFLWLF  60
   61 NLPY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [191-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAFFVTAMYL CTKFFYLANV CLQLMFMNRF LETDKYKWYG MGALVDLLNG TTWEQSGMFP  60
   61 RVSLCDFDVR VMGNMQEHTI QCVLVINIFN EKIFILLWFW YLALLVFTFG SFFYWLLVSL 120
  121 WRHLNVRFII RHLEMSDIAF DSSEDGAQEK VNRFISNYLK SDGVFVIRMM TLQSGVIFGT 180
  181 DLVQELWRNF HGSEPQL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [388-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRSNSAPKIE EREQWWPAYP SLVNPINPWR YRDENQANAL RWRRALGANV DNSIATQDLM  60
   61 EKLLPQNAHM RPSDDELLNR QPIAVQASYI DDESDGKLKN EEKQNQQNAT QPPYCYTNQN 120
  121 PTPYQNQNQI QNQNQYSNYY RTPSLSRGTD SRPVSTATDT DQTKKQSMST FK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle