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View Structure Prediction Details

Protein: inx-10
Organism: Caenorhabditis elegans
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-10.

Description E-value Query
Range
Subject
Range
gi|157764498 - gi|157764498|ref|XP_001674592.1| Hypothetical protein CBG19227 [Caenorhabditis briggsae AF16]
gi|39594553, gi|... - gi|39594553|emb|CAE72131.1| Hypothetical protein CBG19227 [Caenorhabditis briggsae], gi|187024470|em...
612.0 [0..1] [559..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLAAVLSML RYVGGSDDRD FVDRLHSYFT CNLLIGLAVL VSFKQFGGKP VECLVPDIFS  60
   61 SSWEQYAENY CWASDTYYVP TNEPVAGLQS DEKRQRKISY YQWVPFFLLL EAACFRLPSL 120
  121 LWKYLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHSGIKINEI VKLSSDPNNI KPDIKRANIK SLTVHLQGAL RFHRRLQKKQ IRPHRFLWLF  60
   61 NLPY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [191-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAFFVTAMYL CTKFFYLANV CLQLMFMNRF LETDKYKWYG MGALVDLLNG TTWEQSGMFP  60
   61 RVSLCDFDVR VMGNMQEHTI QCVLVINIFN EKIFILLWFW YLALLVFTFG SFFYWLLVSL 120
  121 WRHLNVRFII RHLEMSDIAF DSSEDGAQEK VNRFISNYLK SDGVFVIRMM TLQSGVIFGT 180
  181 DLVQELWRNF HGSEPQL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [388-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRSNSAPKIE EREQWWPAYP SLVNPINPWR YRDENQANAL RWRRALGANV DNSIATQDLM  60
   61 EKLLPQNAHM RPSDDELLNR QPIAVQASYI DDESDGKLKN EEKQNQQNAT QPPYCYTNQN 120
  121 PTPYQNQNQI QNQNQYSNYY RTPSLSRGTD SRPVSTATDT DQTKKQSMST FK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle