YRC Public Data Repository - Protein Structure Prediction

Protein:	bca-1
Organism:	Caenorhabditis elegans
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bca-1.

Description	E-value	Query Range	Subject Range
CE30453 - WBGene00000245 locus:bca-1 status:Confirmed TR:Q8T3C8 protein_id:AAM15604.1	288.0	[0..1]	[270..160]
gi\|39598198, gi\|... - gi\|39598198\|emb\|CAE68890.1\| Hypothetical protein CBG14861 [Caenorhabditis briggsae], gi\|187028203\|em... gi\|157770095 - gi\|157770095\|ref\|XP_001676868.1\| Hypothetical protein CBG14861 [Caenorhabditis briggsae AF16]	262.0	[0..1]	[264..1]
gi\|85058461, gi\|... - gi\|85058461\|ref\|YP_454163.1\| carbonic anhydrase [Sodalis glossinidius str. 'morsitans'], gi\|84778981...	251.0	[0..1]	[253..4]
gi\|255055897, gi... - gi\|255055897\|ref\|ZP_05308122.1\| Carbonate dehydratase [Pectobacterium wasabiae WPP163], gi\|254988268... gi\|50122249, gi\|... - gi\|50122249\|ref\|YP_051416.1\| carbonic anhydrase [Pectobacterium atrosepticum SCRI1043], gi\|49612775\|...	250.0	[0..1]	[249..4]
gi\|62178741, gi\|... - gi\|62178741\|ref\|YP_215158.1\| putative carbonic anhydrase [Salmonella enterica subsp. enterica serova... gi\|205347482, gi... - gi\|205360728\|ref\|ZP_02685949.2\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar H...	250.0	[0..1]	[255..21]
gi\|194448935, gi... - gi\|194448935\|ref\|YP_002044148.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Hei... gi\|238911231 - gi\|238911231\|ref\|ZP_04655068.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Tenn... gi\|197215082, gi... - gi\|197251379\|ref\|YP_002145170.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar ... gi\|195632738, gi... - gi\|195632738\|gb\|EDX51192.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Newpo... gi\|194445260, gi... - gi\|194445260\|ref\|YP_002039406.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar ... gi\|168230463, gi... - gi\|205335031\|gb\|EDZ21795.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Kentu... lcl\|NC_016856.1_... - [gene=yadF] [protein=carbonic anhydrase] [protein_id=YP_005235834.1] [location=complement(202115..20... gi\|205337446, gi... - gi\|205337446\|gb\|EDZ24210.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Heide... gi\|167550631, gi... - gi\|205324392\|gb\|EDZ12231.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Saint... gi\|167990050, gi... - gi\|205331331\|gb\|EDZ18095.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|16763561, gi\|... - gi\|16763561\|ref\|NP_459176.1\| carbonic anhydrase [Salmonella typhimurium LT2], gi\|16418673\|gb\|AAL1913... gi\|162139620 - gi\|162139620\|ref\|YP_215158.2\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Choler... gi\|206707490, gi... - gi\|207855687\|ref\|YP_002242338.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Ent... gi\|213053559 - gi\|213053559\|ref\|ZP_03346437.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh... gi\|200389129, gi... - gi\|200389129\|ref\|ZP_03215741.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar V... gi\|205351512, gi... - gi\|205351512\|ref\|YP_002225313.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Gal... gi\|197240280, gi... - gi\|197262025\|ref\|ZP_03162099.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar S... gi\|198245647, gi... - gi\|198245647\|ref\|YP_002214127.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar ...	250.0	[0..1]	[255..4]
gi\|28807512 - gi\|28807512\|dbj\|BAC60777.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633] gi\|28899288, gi\|... - gi\|28899288\|ref\|NP_798893.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153839857, gi... - gi\|153839857\|ref\|ZP_01992524.1\| carbonic anhydrase [Vibrio parahaemolyticus AQ3810], gi\|149746617\|gb...	249.0	[0..1]	[260..4]
gi\|16759167 - gi\|16759167\|ref\|NP_454784.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typhi s... gi\|213609735 - gi\|213609735\|ref\|ZP_03369561.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh... gi\|213583741 - gi\|213583741\|ref\|ZP_03365567.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh... gi\|213418524 - gi\|213418524\|ref\|ZP_03351590.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh... gi\|16501457, gi\|... - gi\|25291478\|pir\|\|AI0523 carbonic anhydrase [imported] - Salmonella enterica subsp. enterica serovar ... gi\|29136341, gi\|... - gi\|29140717\|ref\|NP_804059.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typhi s... gi\|214000722 - gi\|214000722\|ref\|ZP_03411457.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh... gi\|213852714 - gi\|213852714\|ref\|ZP_03382246.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Typh...	249.0	[0..1]	[255..4]
gi\|204323446, gi... - gi\|204926781\|ref\|ZP_03217983.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar J... gi\|197361380, gi... - gi\|197361380\|ref\|YP_002141015.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Par... gi\|194712491, gi... - gi\|194736989\|ref\|YP_002113190.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar ... gi\|205342536, gi... - gi\|205342536\|gb\|EDZ29300.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Welte... gi\|168234940, gi... - gi\|197291744\|gb\|EDY31094.1\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar Schwa... gi\|161361884, gi... - gi\|161612520\|ref\|YP_001586485.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Par... gi\|56126701, gi\|... - gi\|56412444\|ref\|YP_149519.1\| carbonic anhydrase [Salmonella enterica subsp. enterica serovar Paratyp...	247.0	[0..1]	[255..4]
gi\|36784287, gi\|... - gi\|37524862\|ref\|NP_928206.1\| hypothetical protein plu0867 [Photorhabdus luminescens subsp. laumondii...	247.0	[0..1]	[252..5]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKILRGVIQ FRNTIRKDLV KQFEEIKNNP SPTAVMFTCM DSRMLPTRFT QSQVGDMFVV  60
   61 RNAGNMIPDA PNYGAFSEVS VNTEPAALEL AVKRGGIRHI VVCGHSDCKA INTLYGLHQC 120
  121 PKNFDVTSPM DHWVRRNGFA SVKRLNERLH RGPSSMKFES EVAPSQSFDA IIDPMDTLAM 180
  181 EDKLSQINVL QQLINICSHE FLKEYLESGR LHIHGMWFDI YKGEDYLFSK DKKRFVVIDE 240
  241 KTVTDLLAEL NARYPVPEDQ DGPVAFAKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1i6oA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	1.691366175135	bayes_pls_golite062009
hydro-lyase activity	1.65497918079842	bayes_pls_golite062009
lyase activity	1.62374861994341	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: