| Protein: | irk-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 505 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for irk-1.
| Description | E-value | Query Range |
Subject Range |
|
|
405.0 | [0..40] | [481..71] |
|
Region A: Residues: [1-61] |
1 11 21 31 41 51
| | | | | |
1 MLLDTNTITF PFFVNGLFRF QDSANSLVIQ TKMPSCAHSI SALSFLESIR TLAFTARRNS 60
61 S
|
| Detection Method: |  |
| Confidence: | 44.30103 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [62-417] |
1 11 21 31 41 51
| | | | | |
1 PLYRKSTKKL KKSRLVGKNG ICNVYNTNVP KKDRQYLRDI FTTMIDVKWR WMLMLFASAF 60
61 VLSWSIFGTT YYLIALVHGD LSLPTPVNHT ACVMNLDSVY SSFLFAVETH HTIGYGHRYI 120
121 TTECYLAGAI VCLQAICALL LQSFMVGIVF AKMARPKKRA ETIIFSDKAV ICLRDGQLCF 180
181 LCRVGDMRNT HLVEAHVRLQ FITDRETNEG EIEPLHQFEM KVGPSIADDD RLFLVWPTTL 240
241 CHVIDSRSPL YNYNQQTLMS AQFEIIVLLE GIVESTGMTA QAKTSYLPSE VLWGHRFRKL 300
301 VTYQRSNGSY QIDYDLFHST YPVRTPAMSP AEFYSSKPNL KDYYCHDSHE HKLEDN
|
| Detection Method: | |
| Confidence: | 72.154902 |
| Match: | 2qksA |
| Description: | No description for 2qksA was found. |
|
Region A: Residues: [418-505] |
1 11 21 31 41 51
| | | | | |
1 RSSDSTPLPS PSPYSYPSTP LNHFQSSSNS PVFSNNHSKF NTEAVTCEAG MLCPPTIVVQ 60
61 CPSTCASPNH MRRTRNQMDK SRTRYSIA
|
| Detection Method: | |
| Confidence: | 56.0 |
| Match: | 1u4fA |
| Description: | Crystal Structure of Cytoplasmic Domains of IRK1 (Kir2.1) channel |
Matching Structure (courtesy of the PDB): |
|
