YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04753
Organism:	Caenorhabditis elegans
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04753.

Description	E-value	Query Range	Subject Range
gi\|78517365, gi\|... - gi\|78694249\|ref\|ZP_00858762.1\| 3'-5' exonuclease [Bradyrhizobium sp. BTAi1], gi\|78517365\|gb\|EAP30663...	170.0	[0..28]	[203..98]
gi\|115653109, gi... - gi\|115960717\|ref\|XP_001189337.1\| PREDICTED: similar to exosome component 10 [Strongylocentrotus purp...	168.0	[0..32]	[202..249]
CE14660 - status:Partially_confirmed UniProt:O02211 protein_id:CAB04921.1	166.0	[0..12]	[202..122]
gi\|110289135 - gi\|110289135\|gb\|AAP53938.2\| Nucleolar protein, putative, expressed [Oryza sativa (japonica cultivar-...	166.0	[0..27]	[202..237]
gi\|46432124, gi\|... - gi\|68490644\|ref\|XP_710869.1\| likely nuclear exosome component Rrp6p [Candida albicans SC5314], gi\|46... orf19.58 - orf19.58 CGDID:CAL0000608 Assembly 19, Contig19-10020 (27020, 24660) CDS, reverse complemented, tran...	166.0	[0..31]	[202..215]
gi\|67153906, gi\|... - gi\|67153906\|ref\|ZP_00415651.1\| Ribonuclease D [Azotobacter vinelandii AvOP], gi\|67088039\|gb\|EAM07505... gi\|67153906 - gi\|67153906\|ref\|ZP_00415651.1\| Ribonuclease D [Azotobacter vinelandii AvOP]	165.0	[0..32]	[202..85]
gi\|40741889, gi\|... - gi\|67537662\|ref\|XP_662605.1\| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	164.0	[0..35]	[202..217]
gi\|20071218 - gi\|20071218\|gb\|AAH27326.1\| Exosome component 10 [Mus musculus]	164.0	[0..45]	[202..285]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLNEFINL AKEQVSQGVN ERRTSIMERI VEETEDFNKP AEFENLTITV TEDKEKAKRV  60
   61 LEKFEKHPTV PIYFDSEHSY IRLKNDTKVA AIQLYDSCTR HVLVWRLHNA DHEYLKGVRE 120
  121 QLELLSKARM FATFGKEEFL ENAIKYVTKD LQVNQKSLEA LLLKKEIVIT KWETFSDWTR 180
  181 PVLRPSQERY AVYDVIRLFD LDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1yt3A
Description:	Crystal Structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.722279828632226	bayes_pls_golite062009
hydrolase activity	0.29272620969648	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.24934115119652	bayes_pls_golite062009
nuclease activity	0.239989310123501	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: