| Protein: | pos-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 264 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pos-1.
| Description | E-value | Query Range |
Subject Range |
|
|
200.0 | [0..1] | [255..1] |
|
|
188.0 | [0..1] | [255..1] |
|
|
128.0 | [0..1] | [204..1] |
|
|
127.0 | [0..59] | [257..87] |
|
|
124.0 | [0..15] | [257..1] |
|
|
119.0 | [0..5] | [227..17] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MADNDFLSGE AIMVFKKEIL DSHSDFTRSL SHQSASPEAY DQENVFSQDF QPFMKQDKET 60
61 QNSASQPTSE QSLANRDPCT VPDDLREEMM RQRRKEDAF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [100-173] |
1 11 21 31 41 51
| | | | | |
1 KTALCDAYKR SQACSYGDQC RFAHGVHELR LPMNPRGRNH PKYKTVLCDK FSMTGNCKYG 60
61 TRCQFIHKIV DGNA
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [174-264] |
1 11 21 31 41 51
| | | | | |
1 AKLASGAHAN TSSKSPARNA AAHNHSLFVP QGSTDRSMDL NQSLPIRQSD LVRAFARATR 60
61 LDVSGYNSTA QLAQYFESQF QRIQQLSSHH H
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.625 | d.229.1 | Putative cell cycle protein MesJ, middle and C-terminal domain |
| View | Download | 0.556 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.506 | a.7.14 | Description not found. |
| View | Download | 0.447 | a.29.12 | Description not found. |
| View | Download | 0.383 | a.7.8 | GAT domain |
| View | Download | 0.301 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.293 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.277 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.268 | a.4.5 | "Winged helix" DNA-binding domain |
