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View Structure Prediction Details

Protein: CE04481
Organism: Caenorhabditis elegans
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04481.

Description E-value Query
Range
Subject
Range
gi|50733008 - gi|50733008|ref|XP_418867.1| PREDICTED: similar to Chromosome 7 open reading frame 25 [Gallus gallus...
516.0 [0..4] [403..81]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGVDEDDLE RQRIEKIKEV QEAVAKLTGA KFQKLENLQR MERMLNKEIE LLQNATRKAL  60
   61 ETHLVTCNYA FYKSIIDEVE EMENATAVLK TFKRD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVSVTVDIVM KEPNVWIKLV NRPAKTVLIE YRDGKRNGDV IAQIKQHLFV SRRFNRPQIR  60
   61 IYFRNGVLAE MAQKLIRHGI VVIGEHVDKS DPSLRGKWNE ELIERLGEEE DSDWDEVDED 120
  121 AASIPTLPSS QSQSESTLPR LNLDISAVML LVSNMCEPGG VNYQFK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [262-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEMINKHVEC ERLKPAKAEV LEKLKGHHLI MCELAYRRVA EIVKNVGGPT EKKRFEELSK  60
   61 TIERVQDQPS DEIGRVVKLR NIKGITSITK RVFSCAEVTK TTTVTANQKF LTHSRAKHIY 120
  121 FDVIEIPPRP LTEQKEATAK VI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle