| Protein: | rpa-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 655 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpa-1.
| Description | E-value | Query Range |
Subject Range |
|
|
531.0 | [0..22] | [652..5] |
|
Region A: Residues: [1-216] |
1 11 21 31 41 51
| | | | | |
1 MAAIHINHDV FNKYHTNGKL RLTTGYVQEA IENNGYPGHD GIVQVLKGKV EQGEQLGHAF 60
61 TFRIRISDGV FQYNALMSAD IDDQIKREVE HLVEGTIIAL TKFEIYDQGE GAKNCFLIKG 120
121 YKILSRYHQV LTSPEVKPRS HSGKPDEHKG YRPNIIIEDV WPEAEGMAAD YQENMANPPA 180
181 AKAPKREFGE EASYNRAAAP EATRARAVPP PARRTA
|
| Detection Method: |  |
| Confidence: | 29.39794 |
| Match: | 2b29A |
| Description: | N-terminal domain of the RPA70 subunit of human replication protein A. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.05826047136716 | bayes_pls_golite062009 |
| nucleic acid binding | 0.359779538637606 | bayes_pls_golite062009 |
|
Region A: Residues: [217-470] |
1 11 21 31 41 51
| | | | | |
1 SNTERGVMPI AMVTPYVSNF KIHGMVSRKE EIRTFPAKNT KVFNFEITDS NGDTIRCTAF 60
61 NEVAESLYTT ITENLSYYLS GGSVKQANKK FNNTGHDYEI TLRSDSIIEA GGELLAAPKL 120
121 ILKRVKLGEI AGYAGQLIDV LVVVEKMDPE ATEFTSKAGK SLIKREMELI DESGALVRLT 180
181 LWGDEATKAL VDDYVQKVIA FKGVIPREFN GGFSLGTGSA TRIISVPEIA GVSELYDWYA 240
241 NVKPTTEVKM MSQA
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1jmcA |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.05826047136716 | bayes_pls_golite062009 |
| nucleic acid binding | 0.359779538637606 | bayes_pls_golite062009 |
|
Region A: Residues: [471-655] |
1 11 21 31 41 51
| | | | | |
1 AGGSNEAPRT IAGLQEMQFG KDSDKGDYAT VKAMITRVNP TNALYRGCAS EGCQKKLVGE 60
61 NGDYRCEKCN KNMNKFKWLY MMQFELSDET GQVYVTAFGD SAAKIVGKSA AELGELHDES 120
121 PDEYNAIFER LQFVPKMWRL RCKMDSYNEE VRQKMTVYGV DDVNQDKYIE NLKQMIEQMQ 180
181 QMSDY
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 1l1oC |
| Description: | Replication protein A 70 KDa subunit (RPA70) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.05826047136716 | bayes_pls_golite062009 |
| nucleic acid binding | 0.359779538637606 | bayes_pls_golite062009 |
