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View Structure Prediction Details

Protein: CE03848
Organism: Caenorhabditis elegans
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03848.

Description E-value Query
Range		 Subject
Range
gi|68432331 - gi|68432331|ref|XP_690287.1| PREDICTED: similar to ReO_6 [Danio rerio]
 196.0 [0..10] [141..286]
gi|76612869 - gi|76612869|ref|XP_871733.1| PREDICTED: similar to histone H2A [Bos taurus]
 178.0 [0..12] [144..61]
gi|74004252 - gi|74004252|ref|XP_545426.2| PREDICTED: similar to Histone H2A.l (H2A/l) [Canis familiaris]
 177.0 [0..1] [138..39]
gi|87042811 - gi|87042811|gb|ABD16410.1| HTA6-sGFP [Gateway adapted binary vector pCGTAG]
 177.0 [0..15] [142..12]
gi|87042808 - gi|87042808|gb|ABD16408.1| HTA6-EYFP [Gateway adapted binary vector pFYTAG]
 177.0 [0..15] [142..12]
gi|50728596 - gi|50728596|ref|XP_416195.1| PREDICTED: similar to histone 2, H2ac [Gallus gallus]
 176.0 [0..12] [142..222]

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Predicted Domain #1
Region A:
Residues: [1-145] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLKQRPNR ILNTSTKTSS AKKKKKRISR STRSGLTFPV GRIHRKLRET TRGKQRISAG  60
   61 ASVFMAATLE YLTTELMEMS AIAANESKKS RVTPRHLHLA IYGDQETAQL LDKVTLPQGG 120
  121 VTPMPIHPSL LPKKKAKEDD KENNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.30103
Match: 2f8nK
Description: No description for 2f8nK was found.

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle