YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03656
Organism:	Caenorhabditis elegans
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03656.

Description	E-value	Query Range	Subject Range
gi\|187035513, gi... - gi\|39590011\|emb\|CAE61009.1\| Hypothetical protein CBG04747 [Caenorhabditis briggsae], gi\|187035513\|em... gi\|157765356 - gi\|157765356\|ref\|XP_001675021.1\| Hypothetical protein CBG04747 [Caenorhabditis briggsae AF16]	350.0	[0..1]	[238..1]
mRpS18B-PB, mRpS... - The gene mitochondrial ribosomal protein S18B is referred to in FlyBase by the symbol Dmel\mRpS18B (... gi\|220954374, gi... - gi\|220954374\|gb\|ACL89730.1\| mRpS18B-PA [synthetic construct], gi\|220944418\|gb\|ACL84752.1\| mRpS18B-PA...	214.0	[0..2]	[184..12]
RT18B_MOUSE - 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=1 SV=1	200.0	[0..40]	[198..35]
RT18B_PIG - 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B PE=1 SV=1	196.0	[0..40]	[198..37]
gi\|47087117, gi\|... - gi\|47087117\|ref\|NP_997699.1\| mitochondrial ribosomal protein S18B [Rattus norvegicus], gi\|46237662\|e...	192.0	[0..41]	[198..35]
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1	192.0	[0..40]	[198..37]
RT18B_BOVIN - 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B PE=1 SV=2	191.0	[0..40]	[198..37]
gi\|208966778 - gi\|208966778\|dbj\|BAG73403.1\| mitochondrial ribosomal protein S18B [synthetic construct] MRPS18B - mitochondrial ribosomal protein S18B	190.0	[0..40]	[198..37]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATGGSFAR RLIHSSCRLA CEGKTKEVPT PEEAGYAYNH VERKKGMYKP QHSIAEQISY  60
   61 MKSRGYAEAY KGLPIYRWYK RNIKGQSKLQ PPPRLFCIDK HGRFNLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.645	c.78.2	Aspartate/glutamate racemase
View	Download	0.482	a.7.6	Ribosomal protein S20
View	Download	0.414	a.58.1	Chemotaxis receptor methyltransferase CheR, N-terminal domain
View	Download	0.398	c.78.2	Aspartate/glutamate racemase
View	Download	0.330	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [108-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HACPVCRDEY LYFDYRNPGL IEQFLADGTD QPIDILKSGL CREQYTLLRA QLLKAKEHGT  60
   61 ITFGVEFRNF DYRQWYKSWT DEPGKPVERA GVRLQDIHPD PLVHFPTFKN DKNNDWDEWW 120
  121 IRHDKFAKKA K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural molecule activity	0.0605029775839588	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: