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View Structure Prediction Details

Protein: fem-3
Organism: Caenorhabditis elegans
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fem-3.

Description E-value Query
Range
Subject
Range
gi|60266803 - gi|60266803|gb|AAX16084.1| sex determination protein FEM-3 [Caenorhabditis remanei]
592.0 [0..11] [371..52]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDPGSDDV EADRETRAQK LKLKRNVKFR AQMRRFDEYC GVTNLTVDDL NWPLISGIPL  60
   61 QRQRLTGATY YDDSLLDQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWDEFSIDRF LEITSIQLIT AGAGYERNDE ITRFVFQRTM KTIVTYCNFM YDLARRNGKV  60
   61 QITRFELQDL IHRDEFRFYM YFRQFLPNP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [169-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPNCTAFSNH YTSLLHTLYF NIPGMPQFWN NSQMYNYAAT RGQRLVQNIA AFYPPEYFWN  60
   61 EDESKYHTTF VVPRGTEFSK FYARRFHEAL GMPPLENEII TVLDWLAKLC ILEIVYHTTI 120
  121 WCDITGFGGL PRIEHYRLAM ENVEDIIFDL AIDDFSISRL QLQISPFEIS RYSPLDVSGY 180
  181 YETIKRKKDI EEYQNRFYEV HYSDDVRIMN VYATDCSRKR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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