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View Structure Prediction Details

Protein: fem-3
Organism: Caenorhabditis elegans
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fem-3.

Description E-value Query
Range
Subject
Range
gi|60266803 - gi|60266803|gb|AAX16084.1| sex determination protein FEM-3 [Caenorhabditis remanei]
592.0 [0..11] [371..52]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDPGSDDV EADRETRAQK LKLKRNVKFR AQMRRFDEYC GVTNLTVDDL NWPLISGIPL  60
   61 QRQRLTGATY YDDSLLDQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWDEFSIDRF LEITSIQLIT AGAGYERNDE ITRFVFQRTM KTIVTYCNFM YDLARRNGKV  60
   61 QITRFELQDL IHRDEFRFYM YFRQFLPNP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [169-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPNCTAFSNH YTSLLHTLYF NIPGMPQFWN NSQMYNYAAT RGQRLVQNIA AFYPPEYFWN  60
   61 EDESKYHTTF VVPRGTEFSK FYARRFHEAL GMPPLENEII TVLDWLAKLC ILEIVYHTTI 120
  121 WCDITGFGGL PRIEHYRLAM ENVEDIIFDL AIDDFSISRL QLQISPFEIS RYSPLDVSGY 180
  181 YETIKRKKDI EEYQNRFYEV HYSDDVRIMN VYATDCSRKR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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