| Protein: | cpna-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 512 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpna-3.
| Description | E-value | Query Range |
Subject Range |
|
|
464.0 | [0..11] | [511..16] |
|
Region A: Residues: [1-262] |
1 11 21 31 41 51
| | | | | |
1 MAAYGIEITF AIRNARFYPS ADGVSLKIFS LDKDMEVVEK VAETEAIYGQ SDAFFTEKLN 60
61 LNYRIEKMQR YRVTINVLNS STKTIMGSMG TADFDISMMF ACGGRLILLI ASPLAPCSLE 120
121 IVGKVPDYYS QFLRIRFSGN YLHSPSDVIP LQLYYILSIP TEERTIMLYK SEMLRETKYP 180
181 EWAAFSIPLF LLNYFNESSI QLHVYNYTPN HDDQLVGHCT TTLTQLQQGV GHFNSYMLME 240
241 PNGKRIHEKT CIELKELSLE NG
|
| Detection Method: |  |
| Confidence: | 51.0 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [263-512] |
1 11 21 31 41 51
| | | | | |
1 PTFFQMMENN VKIQLTSAID LTASNGNPVN QSSLHYIHPH QPSPYLEALL QTVPPLLAYL 60
61 PNPQNPHIGA LGFGAKVQVP GGALQLSHCF CLNGTPTDPR VEGLGGLLSA YRTAVMGLQP 120
121 FAPTDFSEVI YFMSKFAKAE SRRHVGLYFV LIIYSDGGPA NALNMKRSID AIVDASPHPM 180
181 SIIGVGMGQD RDHSPMRNLE KLTLKHSDGR LLVRQNYSYV DPSDLESSDV LAMIPIQMAQ 240
241 WKRMFHFDPK
|
| Detection Method: | |
| Confidence: | 1.9 |
| Match: | 1q0pA |
| Description: | A domain of Factor B |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.81919531784101 | bayes_pls_golite062009 |
| protein binding | 1.45085467238549 | bayes_pls_golite062009 |
| integrin binding | 0.339173113651591 | bayes_pls_golite062009 |
| signal transducer activity | 0.329682216036263 | bayes_pls_golite062009 |
| molecular transducer activity | 0.329682216036263 | bayes_pls_golite062009 |
| transporter activity | 0.0558594515749923 | bayes_pls_golite062009 |
| catalytic activity | 0.0380261580236634 | bayes_pls_golite062009 |
