YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02895
Organism:	Caenorhabditis elegans
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02895.

Description	E-value	Query Range	Subject Range
gi\|85085941 - gi\|85085941\|ref\|XP_957607.1\| hypothetical protein NCU03968 [Neurospora crassa OR74A] gi\|40882317, gi\|... - gi\|40882317\|emb\|CAF06139.1\| related to DNA repair protein MMS21 [Neurospora crassa], gi\|32405348\|ref...	161.0	[0..13]	[200..171]
gi\|114621637, gi... - gi\|114621643\|ref\|XP_001152705.1\| PREDICTED: similar to Non-SMC element 2 homolog (MMS21, S. cerevisi... NSMCE2 - non-SMC element 2, MMS21 homolog (S. cerevisiae)	159.0	[0..14]	[198..28]
NSE2_RAT - E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2 SV=1	158.0	[0..14]	[198..28]
NSE2_SCHPO - E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse2 PE=1 SV=2 nse2 - Smc5-6 complex non-SMC subunit 2	155.0	[0..10]	[201..66]
NSE2_MOUSE - E3 SUMO-protein ligase NSE2 OS=Mus musculus GN=Nsmce2 PE=2 SV=1	155.0	[0..14]	[198..28]
gi\|11994504 - gi\|11994504\|dbj\|BAB02569.1\| unnamed protein product [Arabidopsis thaliana]	149.0	[0..14]	[201..117]
gi\|157751960 - gi\|157751960\|ref\|XP_001679692.1\| Hypothetical protein CBG02509 [Caenorhabditis briggsae AF16] gi\|39596971, gi\|... - gi\|39596971\|emb\|CAE59198.1\| Hypothetical protein CBG02509 [Caenorhabditis briggsae], gi\|187037351\|em...	149.0	[0..9]	[200..6]
NSE2_BOVIN - E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1	146.0	[0..14]	[198..30]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQLATSME IIRKSLRKAA EDVLHINSKN AISNEVDSEE FKETLMKDAM KLMELETEGA  60
   61 QMQHIFEALH NDLKDGSDEV PNEKALEELY EKAKKTHKNV KGERQYFKDI IKSIRDES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNDENEMEVM QVQHSRKDPI SKKDIVNPVI SKNCGHVYDR DSIHEFAGKK RVIKCAMQGC  60
   61 SETINIGQLA DYPDYWTNIK QQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2yu4A
Description:	No description for 2yu4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits