YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02895
Organism:	Caenorhabditis elegans
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02895.

Description	E-value	Query Range	Subject Range
gi\|85085941 - gi\|85085941\|ref\|XP_957607.1\| hypothetical protein NCU03968 [Neurospora crassa OR74A] gi\|40882317, gi\|... - gi\|40882317\|emb\|CAF06139.1\| related to DNA repair protein MMS21 [Neurospora crassa], gi\|32405348\|ref...	161.0	[0..13]	[200..171]
gi\|114621637, gi... - gi\|114621643\|ref\|XP_001152705.1\| PREDICTED: similar to Non-SMC element 2 homolog (MMS21, S. cerevisi... NSMCE2 - non-SMC element 2, MMS21 homolog (S. cerevisiae)	159.0	[0..14]	[198..28]
NSE2_RAT - E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2 SV=1	158.0	[0..14]	[198..28]
NSE2_SCHPO - E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse2 PE=1 SV=2 nse2 - Smc5-6 complex non-SMC subunit 2	155.0	[0..10]	[201..66]
NSE2_MOUSE - E3 SUMO-protein ligase NSE2 OS=Mus musculus GN=Nsmce2 PE=2 SV=1	155.0	[0..14]	[198..28]
gi\|11994504 - gi\|11994504\|dbj\|BAB02569.1\| unnamed protein product [Arabidopsis thaliana]	149.0	[0..14]	[201..117]
gi\|157751960 - gi\|157751960\|ref\|XP_001679692.1\| Hypothetical protein CBG02509 [Caenorhabditis briggsae AF16] gi\|39596971, gi\|... - gi\|39596971\|emb\|CAE59198.1\| Hypothetical protein CBG02509 [Caenorhabditis briggsae], gi\|187037351\|em...	149.0	[0..9]	[200..6]
NSE2_BOVIN - E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1	146.0	[0..14]	[198..30]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQLATSME IIRKSLRKAA EDVLHINSKN AISNEVDSEE FKETLMKDAM KLMELETEGA  60
   61 QMQHIFEALH NDLKDGSDEV PNEKALEELY EKAKKTHKNV KGERQYFKDI IKSIRDES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.605	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.585	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.575	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.574	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.570	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

Predicted Domain #2

Region A:
Residues: [119-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNDENEMEVM QVQHSRKDPI SKKDIVNPVI SKNCGHVYDR DSIHEFAGKK RVIKCAMQGC  60
   61 SETINIGQLA DYPDYWTNIK QQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2yu4A
Description:	No description for 2yu4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits