YRC Public Data Repository - Protein Structure Prediction

Protein:	mps-1
Organism:	Caenorhabditis elegans
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mps-1.

Description	E-value	Query Range	Subject Range
gi\|39597059, gi\|... - gi\|39597059\|emb\|CAE59286.1\| Hypothetical protein CBG02619 [Caenorhabditis briggsae], gi\|187037263\|em... gi\|157751784 - gi\|157751784\|ref\|XP_001679604.1\| Hypothetical protein CBG02619 [Caenorhabditis briggsae AF16]	499.0	[0..1]	[302..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKNISPTCQ EGIREACITL KNACDPQVLD KAAIRMREYE NEFGRILYTI SILIMFSFVI  60
   61 ILLMVRSIRR TQSTVEMDSL LDAMRIREEL EIQERKRRRL MRAKTQVTAW LVNKNKEKGP 120
  121 EKRKDSEWKP LPNGTRPRGH YSISTVTSDI PEIVVSADDC IHSDFPNRPH TPAISMIYDF 180
  181 GIASPDLIEP DSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPSISSSTAI PMSSSSSSSM NSLIEPNMNS IKSNPRTYSL DTNASTSSRT PRVDCDDKSF  60
   61 SLDVHVDCAG LVSVVRWLLI RRFDVTVFLP VVYNNVNNYN SKNAELLAVR