YRC Public Data Repository - Protein Structure Prediction

Protein:	mps-1
Organism:	Caenorhabditis elegans
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mps-1.

Description	E-value	Query Range	Subject Range
gi\|39597059, gi\|... - gi\|39597059\|emb\|CAE59286.1\| Hypothetical protein CBG02619 [Caenorhabditis briggsae], gi\|187037263\|em... gi\|157751784 - gi\|157751784\|ref\|XP_001679604.1\| Hypothetical protein CBG02619 [Caenorhabditis briggsae AF16]	499.0	[0..1]	[302..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKNISPTCQ EGIREACITL KNACDPQVLD KAAIRMREYE NEFGRILYTI SILIMFSFVI  60
   61 ILLMVRSIRR TQSTVEMDSL LDAMRIREEL EIQERKRRRL MRAKTQVTAW LVNKNKEKGP 120
  121 EKRKDSEWKP LPNGTRPRGH YSISTVTSDI PEIVVSADDC IHSDFPNRPH TPAISMIYDF 180
  181 GIASPDLIEP DSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPSISSSTAI PMSSSSSSSM NSLIEPNMNS IKSNPRTYSL DTNASTSSRT PRVDCDDKSF  60
   61 SLDVHVDCAG LVSVVRWLLI RRFDVTVFLP VVYNNVNNYN SKNAELLAVR