YRC Public Data Repository - Protein Structure Prediction

Protein:	rsp-4
Organism:	Caenorhabditis elegans
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp-4.

Description	E-value	Query Range	Subject Range
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1	128.0	[0..12]	[179..320]
gi\|49657746, gi\|... - gi\|50426951\|ref\|XP_462076.1\| hypothetical protein DEHA0G13255g [Debaryomyces hansenii CBS767], gi\|49... PABP_DEBHA - Polyadenylate-binding protein, cytoplasmic and nuclear - Debaryomyces hansenii (Yeast) (Torulaspora ...	124.0	[0..20]	[183..336]
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1	124.0	[0..20]	[189..323]
gi\|7528270 - gi\|7528270\|gb\|AAF63202.1\|AF240679_1 poly(A)-binding protein [Cucumis sativus]	123.0	[0..1]	[176..293]
gi\|32490269, gi\|... - gi\|50926280\|ref\|XP_473087.1\| OSJNBa0014K14.18 [Oryza sativa (japonica cultivar-group)], emb\|CAE02946...	123.0	[0..1]	[195..303]
gi\|7439967, gi\|1... - pir\|\|T06979 polyadenylate-binding protein - wheat, gi\|1737492\|gb\|AAB38974.1\| poly(A)-binding protein...	122.0	[0..10]	[195..305]
gi\|13560783 - gi\|13560783\|gb\|AAK30205.1\|AF349964_1 poly(A)-binding protein [Daucus carota]	122.0	[0..20]	[179..323]
PAP1A_DICDI - Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1 gi\|60462370, gi\|... - gi\|66800163\|ref\|XP_629007.1\| RNA-binding region-containing protein (RNP-1) [Dictyostelium discoideum...	121.0	[0..20]	[193..285]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRGGGGDRR AAPDINGLTS LKIDNLSYQT TPNDLRRTFE RYGDIGDVHI PRDKYSRQSK  60
   61 GFGFVRFYER RDAEHALDRT DGKLVDGREL RVTLAKYDRP SDERGGRGGG GGRRRSRSPR 120
  121 RRSRSPRYSR SRSPRRSRSR TRSPPSRDRR DSPDRRDNSR SRSRSPPPRE DGSPKERRSR 180
  181 SRSASRSPSR SRSNSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1h2tZ
Description:	CBP20, 20KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: