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View Structure Prediction Details

Protein: CE01629
Organism: Caenorhabditis elegans
Length: 536 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01629.

Description E-value Query
Range
Subject
Range
gi|114647758 - gi|114647758|ref|XP_509475.2| PREDICTED: scavenger receptor class B, member 1 [Pan troglodytes]
514.0 [0..2] [536..156]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIKRYEII SFVIAAFFFL SGLSMWIAFW PIFNSELRSN YKLGANDDGS LHYAAFLYAN  60
   61 PPMKNVMKFN LFNVTNPDEV KYLGAKPELI EVGGYAFLES EQKKYYEFSS DKTKMFYQN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKQYHYSEVD NDAGYNYNDK IMFPNSIAEG AVSTVFGPQS EFSPTAKILV SIGLVMLGEY  60
   61 PFISKTVKDV LMDGYEDPLL SVAHSGIFIS LVNFYGYGSQ LNYIPEMKTF AYLSGYNNSY 120
  121 DENYWINTGY NDFNKLGFVE SWAGLEQLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASFWPTLEAR QIKGPDSGSL SKIHLTKTDE LPFFLSFMCR SFKRTYWQDG LVDGIKTMAF  60
   61 AVPYEEFDTT LEKNAGFRYK NQENVDYFPD WCDKNTTTSL SQCQKTANGT FLLPPGIFPL 120
  121 VCYPGHNAQP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [399-536]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFTVLVSPPH FLYSPPEVQH HLSGMNPDPE KHKPMVFHQE KTSGTALQVD VRFQVNLPVV  60
   61 NNKGSIMSSQ MPNVIIPLFY EDSHALVKDF VMDTVWLGVI IVPRIIEYLK FVLSFISICI 120
  121 LTTLLVIRVR VKGTVSVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle