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View Structure Prediction Details

Protein: npp-19
Organism: Caenorhabditis elegans
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-19.

Description E-value Query
Range
Subject
Range
npp-19 - status:Partially_confirmed UniProt:Q09601 protein_id:CAA86784.1
190.0 [0..1] [378..1]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSHLNQNTS GRHNSMDLNN SSISNFGTPV EQSTPALLFG KRKATVPSSY TASPLNTASA  60
   61 PCSDIFAVSA PAVPQH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKDTPGSKSV HWSPSLVQSG EKSAAQTQNT PANLSFGGNS SFSAPTKPAP QSIQTSSFGG  60
   61 QAMHAPPLRS LRDKVEPAKK ISRRNTFTAR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [167-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STPLSTPITQ RVTSRLAEAE EQPMEEEADA ADTWVTVFGF QPSQVSILLN LFSRHGEVVS  60
   61 HQTPSKGNFI HMRYSCVTHA QQAISRNGTL LDQDTFIGVV QCTNKDVING SASGIVARSS 120
  121 NIAAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1wwhA
Description: Crystal structure of the MPPN domain of mouse Nup35
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [292-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANRSASMYNS FVENDMADQS VNHNENSVLN SSNVFDANNS LNSSRISVRS GVGMRPLAAD  60
   61 QRTNGTPSVR KAPDGLLNKF WNTIGLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle