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View Structure Prediction Details

Protein: CE01395
Organism: Caenorhabditis elegans
Length: 757 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01395.

Description E-value Query
Range
Subject
Range
gi|73989883 - gi|73989883|ref|XP_542747.2| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
609.0 [0..2] [753..54]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTTAARTA SSRVGATTLL TIVVLALAWF VGFASRLFAI VRFESIIHEF DPWFNYRATH  60
   61 HMVQHGFYKF LNWFDERAWY PLGRIVGGTV YPGLMVTSGL IHWILDSLNF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVHIREVCVF LAPTFSGLTA IATYLLTKEL WSPGAGLFAA CFIAISPGYT SRSVAGSYDN  60
   61 EGIAIFALQF TYYLWVKSLK TGSIMWASLC ALSYFYMVSA WGGYVFIINL IPLHALALII 120
  121 MGRYSSRLFV SYTSFYCLAT ILSMQVPFVG FQPVRTSEHM PAFGVFGLLQ IVALMHYARN 180
  181 RI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [293-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRQQFMTLFV GGLTILGALS VVVYFALVWG GYVAPFSGRF YSLWDTGYAK IHIPIIASVS  60
   61 EHQPTTWVSF FFDLHITAAV FPVGLWYCIK KVNDERVFII LYAVSAVYFA GVMVRLMLTL 120
  121 TPAVCVLAGI GFSYTFEKYL KDEETKERSS SQSGTTKDEK LYDKAAKNVK SRNANDGDES 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [474-605]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSNVRTIIS IILVIFLLMF VVHATYVTSN AYSHPSVVLQ SSTNNGDRII MDDFREAYHW  60
   61 LRENTADDAR VMSWWDYGYQ IAGMANRTTL VDNNTWNNSH IALVGKAMSS NESAAYEIMT 120
  121 ELDVDYILVI FG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [606-757]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVIGYSGDDI NKFLWMVRIA QGEHPKDIRE ENYFTSTGEY STGAGASETM LNCLMYKMSY  60
   61 YRFGETRVGY NQAGGFDRTR GYVIGKKDIT LEYIEEAYTT ENWLVRIYKR KKLPNRPTVK 120
  121 SEEATIPIKG KKATQGKNKK GVIRPAPTAS KA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle