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View Structure Prediction Details

Protein: CE01395
Organism: Caenorhabditis elegans
Length: 757 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01395.

Description E-value Query
Range
Subject
Range
gi|73989883 - gi|73989883|ref|XP_542747.2| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
609.0 [0..2] [753..54]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTTAARTA SSRVGATTLL TIVVLALAWF VGFASRLFAI VRFESIIHEF DPWFNYRATH  60
   61 HMVQHGFYKF LNWFDERAWY PLGRIVGGTV YPGLMVTSGL IHWILDSLNF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVHIREVCVF LAPTFSGLTA IATYLLTKEL WSPGAGLFAA CFIAISPGYT SRSVAGSYDN  60
   61 EGIAIFALQF TYYLWVKSLK TGSIMWASLC ALSYFYMVSA WGGYVFIINL IPLHALALII 120
  121 MGRYSSRLFV SYTSFYCLAT ILSMQVPFVG FQPVRTSEHM PAFGVFGLLQ IVALMHYARN 180
  181 RI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [293-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRQQFMTLFV GGLTILGALS VVVYFALVWG GYVAPFSGRF YSLWDTGYAK IHIPIIASVS  60
   61 EHQPTTWVSF FFDLHITAAV FPVGLWYCIK KVNDERVFII LYAVSAVYFA GVMVRLMLTL 120
  121 TPAVCVLAGI GFSYTFEKYL KDEETKERSS SQSGTTKDEK LYDKAAKNVK SRNANDGDES 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [474-605]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSNVRTIIS IILVIFLLMF VVHATYVTSN AYSHPSVVLQ SSTNNGDRII MDDFREAYHW  60
   61 LRENTADDAR VMSWWDYGYQ IAGMANRTTL VDNNTWNNSH IALVGKAMSS NESAAYEIMT 120
  121 ELDVDYILVI FG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [606-757]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVIGYSGDDI NKFLWMVRIA QGEHPKDIRE ENYFTSTGEY STGAGASETM LNCLMYKMSY  60
   61 YRFGETRVGY NQAGGFDRTR GYVIGKKDIT LEYIEEAYTT ENWLVRIYKR KKLPNRPTVK 120
  121 SEEATIPIKG KKATQGKNKK GVIRPAPTAS KA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle