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View Structure Prediction Details

Protein: CE01090
Organism: Caenorhabditis elegans
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01090.

Description E-value Query
Range
Subject
Range
gi|75907715, gi|... - gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena variabili...
243.0 [0..13] [325..127]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDKSAEVV VLPRENDEES KEPVLKNQFD LSTFDIDSPE IDLTHTRADH IPDLTGFPKI  60
   61 EELRMRNNLL VSISPTISSL VTLTSLDLYE NQLTEISHLE SLVNLVSLDL SYNRIRQING 120
  121 LDKLTKLETL YLVSNKIEKI ENLEALTQLK LLELGDNRIK KIENIGHLVN LDELFIGKNK 180
  181 IRQLEGVETL QKLSVLSLPG NRIVKIENVE QLNNLKELYL SDQGLQDIHG VEPLTNLLLL 240
  241 DVANNEIKTF SGVERLESLN DFWANDNKVE SFSEIEQLSK LKGLQTVYLE RNPFYFNDTN 300
  301 QYRRKVMMTL TQVTQIDATT CRKPIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 2omuA
Description: No description for 2omuA was found.

Predicted functions:

Term Confidence Notes
binding 1.87302803330255 bayes_pls_golite062009
receptor activity 0.823142813332745 bayes_pls_golite062009
protein binding 0.646159692466759 bayes_pls_golite062009
transmembrane receptor activity 0.569410390698942 bayes_pls_golite062009
signal transducer activity 0.405945668463821 bayes_pls_golite062009
molecular transducer activity 0.405945668463821 bayes_pls_golite062009
phosphatase regulator activity 0.276491806064691 bayes_pls_golite062009
nucleic acid binding 0.246718758617065 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle