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View Structure Prediction Details

Protein: glb-17
Organism: Caenorhabditis elegans
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-17.

Description E-value Query
Range
Subject
Range
gi|157767528 - gi|157767528|ref|XP_001667244.1| Hypothetical protein CBG16082 [Caenorhabditis briggsae AF16]
gi|187026710, gi... - gi|39596154|emb|CAE69791.1| Hypothetical protein CBG16082 [Caenorhabditis briggsae], gi|187026710|em...
365.0 [0..1] [216..1]
glb-21 - status:Predicted UniProt:Q7YWV3 protein_id:CAE17922.1
294.0 [0..6] [209..9]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCSSKKRM TTEITDEEVT AIRDVWRRAK TDNVGKKILQ TLIEKRPKFA EYFGIQSESL  60
   61 DIRALNQSKE FHLQAHRIQN FLDTAVGSLG FCPISSVFDM AHRIGQIHFY RGVNF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1umoA
Description: The crystal structure of cytoglobin: the fourth globin type discovered in amn
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [116-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GADNWLVFKK VTVDQVTTGT TDSSKEKEDT NSNGTANGKV DTDASLIPIA DINNVYSGEN  60
   61 CLARLGWNKL MTVIVREMKR GFLEEAMRNC KEEDNNGLLS A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle