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View Structure Prediction Details

Protein: CE00852
Organism: Caenorhabditis elegans
Length: 309 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00852.

Description E-value Query
Range		 Subject
Range
gi|77996551, gi|... - gi|78044436|ref|YP_360431.1| 3-hydroxybutyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z...
 302.0 [0..21] [308..2]

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Predicted Domain #1
Region A:
Residues: [1-309] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSTCTAAV RGLSTTAQLS KINNVTIIGA GLMGSGIAQV SANAKLNVTV VDSNQSALEK  60
   61 AQQGIANSLK RVAKKKHADD AAAQTALVSS VLDRIKMSTN VSDSVKDADL VIEAIVENID 120
  121 IKRKLFAEVE VAAKPTTLIT TNTSSLRLAD IGLNLKDKSR FGGLHFFNPV PMMKLLEVVR 180
  181 HTETSDATFN QLVDYGKTVG KTTVACKDTP GFIVNRLLVP YMFEALRLYE RGDASMEDID 240
  241 VAMKLGAGYP MGPFELSDYV GLDTCKFIMD GWHAQYPEEV AFTPSPLLNS LVDSGKNGRK 300
  301 SGEGFYKYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.09691
Match: 3hdhA
Description: Short chain L-3-hydroxyacyl CoA dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 3.09625241707629 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.65338499044318 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 1.61759001796638 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.47309297191111 bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity 1.25489401408719 bayes_pls_golite062009
transporter activity 0.793769336118517 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.788034697021177 bayes_pls_golite062009
transmembrane transporter activity 0.635891484075352 bayes_pls_golite062009
binding 0.553666136934364 bayes_pls_golite062009
retinol dehydrogenase activity 0.530688665000667 bayes_pls_golite062009
phosphogluconate dehydrogenase (decarboxylating) activity 0.44449320501876 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.439912268968251 bayes_pls_golite062009
substrate-specific transporter activity 0.300373102236296 bayes_pls_golite062009
active transmembrane transporter activity 0.239024094835991 bayes_pls_golite062009
signal transducer activity 0.201915860594054 bayes_pls_golite062009
molecular transducer activity 0.201915860594054 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.165260811069909 bayes_pls_golite062009
fatty acid synthase activity 0.0962368786590111 bayes_pls_golite062009
ion transmembrane transporter activity 0.0257250793986203 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle