YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7500711
Organism:	Caenorhabditis elegans
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7500711.

Description	E-value	Query Range	Subject Range
rps-21 - Ribosomal protein S21 status:Confirmed UniProt:P49197 protein_id:AAC48297.2	167.0	[0..64]	[151..1]
RS21_CAEBR - 40S ribosomal protein S21 OS=Caenorhabditis briggsae GN=rps21 PE=3 SV=1 gi\|157774883 - gi\|157774883\|ref\|XP_001665507.1\| hypothetical protein CBG16614 [Caenorhabditis briggsae AF16]	166.0	[0..64]	[151..1]
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	161.0	[0..64]	[146..79]
gi\|73992422 - gi\|73992422\|ref\|XP_543084.2\| PREDICTED: similar to ribosomal protein S21 isoform 1 [Canis familiaris... RS21_BOVIN - 40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1 RPS21 - ribosomal protein S21 gi\|114685480, gi... - gi\|114685480\|ref\|XP_514766.2\| PREDICTED: similar to ribosomal protein S21 isoform 3 [Pan troglodytes... ENSCJAT00000027617 - null RS21_PIG - 40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=1 SV=1	159.0	[0..64]	[146..1]
gi\|109091379 - gi\|109091379\|ref\|XP_001088137.1\| PREDICTED: similar to ribosomal protein S21 [Macaca mulatta]	158.0	[0..64]	[146..1]
gi\|61369987 - gi\|61369987\|gb\|AAX43423.1\| ribosomal protein S21 [synthetic construct]	158.0	[0..64]	[145..1]
RS21_CERCA - 40S ribosomal protein S21 OS=Ceratitis capitata GN=RpS21 PE=2 SV=1	157.0	[0..64]	[145..1]
gi\|58376031, gi\|... - gi\|58376031\|ref\|XP_307843.2\| ENSANGP00000018631 [Anopheles gambiae str. PEST], gi\|55246382\|gb\|EAA036... AGAP009431-PA, A... - RpS21: 40S ribosomal protein S21\|protein_coding\|3R:33472620:33473238:1\|gene:AGAP009431, RpS21: 40S r...	157.0	[0..64]	[146..1]
RS21_DROYA - 40S ribosomal protein S21 OS=Drosophila yakuba GN=RpS21 PE=3 SV=1 oho23B-PB, FBpp0... - The gene overgrown hematopoietic organs at 23B is referred to in FlyBase by the symbol Dmel\oho23B (... RS21_DROSE - 40S ribosomal protein S21 OS=Drosophila sechellia GN=RpS21 PE=3 SV=1 RS21_DROER - 40S ribosomal protein S21 OS=Drosophila erecta GN=RpS21 PE=3 SV=1	157.0	[0..64]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSPRPASIG LLALARLLGF FLNFLPYFSY SNAKLRFILE IVTKDFSDLL VTINVQKFWF  60
   61 QVIMQNDAGQ TVELYVPRKC SSSNRIIGPK DHASVQIDFV DVDPETGRMI PGKSTRYAIC 120
  121 GAIRRMGESD DAILRLAQKD GLVPRDDVKS N

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.124939
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.580	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.482	N/A	N/A	d.129.4	Cell-division protein ZipA, C-terminal domain
View	Download	0.468	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.453	N/A	N/A	d.228.1	Replication modulator SeqA, C-terminal DNA-binding domain
View	Download	0.442	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits