YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00707
Organism:	Caenorhabditis elegans
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00707.

Description	E-value	Query Range	Subject Range
gi\|195576684, gi... - gi\|195576684\|ref\|XP_002078205.1\| GD22663 [Drosophila simulans], gi\|194190214\|gb\|EDX03790.1\| GD22663 ... gi\|195472773, gi... - gi\|195472773\|ref\|XP_002088673.1\| Rpn11 [Drosophila yakuba], gi\|194174774\|gb\|EDW88385.1\| Rpn11 [Droso... gi\|220957124, gi... - gi\|220957124\|gb\|ACL91105.1\| Rpn11-PA [synthetic construct], gi\|220947746\|gb\|ACL86416.1\| Rpn11-PA [sy... gi\|195342656, gi... - gi\|195342656\|ref\|XP_002037916.1\| GM18036 [Drosophila sechellia], gi\|194132766\|gb\|EDW54334.1\| GM18036... gi\|190660634, gi... - gi\|194856517\|ref\|XP_001968767.1\| GG24318 [Drosophila erecta], gi\|190660634\|gb\|EDV57826.1\| GG24318 [D... Rpn11-PA - The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a pr...	309.0	[0..1]	[318..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLIRSLLM NQNKQATDKL DHPDTSETVN ISSLALLKML RHARSGIPLE VMGLMLGDFV  60
   61 DDYTINVTDV FAMPQSGTSV TVESVDPVYQ TKHMDLLKLV GRTENVVGWY HSHPGFGCWL 120
  121 SSVDVNTQQS FEALHPRAVA VVVDPIQSVK GKVMLDAFRS VNPLNLQIRP LAPTAEPRQT 180
  181 TSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [184-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGHLTKPSLI SVVHGLGTKY YSLNVAYRMG SNEQKMLMCL NKKSWYDQLN MSTYSELEKK  60
   61 QEEKFKSINK LIAVFNKDID EVKEKPIADK KGKTQEEVKK FGKINAKQQL QMITSSLLND 120
  121 SLCHQLTAMI NAKSMT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits