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View Structure Prediction Details

Protein: CE00707
Organism: Caenorhabditis elegans
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00707.

Description E-value Query
Range
Subject
Range
gi|195576684, gi... - gi|195576684|ref|XP_002078205.1| GD22663 [Drosophila simulans], gi|194190214|gb|EDX03790.1| GD22663 ...
gi|195472773, gi... - gi|195472773|ref|XP_002088673.1| Rpn11 [Drosophila yakuba], gi|194174774|gb|EDW88385.1| Rpn11 [Droso...
gi|220957124, gi... - gi|220957124|gb|ACL91105.1| Rpn11-PA [synthetic construct], gi|220947746|gb|ACL86416.1| Rpn11-PA [sy...
gi|195342656, gi... - gi|195342656|ref|XP_002037916.1| GM18036 [Drosophila sechellia], gi|194132766|gb|EDW54334.1| GM18036...
gi|190660634, gi... - gi|194856517|ref|XP_001968767.1| GG24318 [Drosophila erecta], gi|190660634|gb|EDV57826.1| GG24318 [D...
Rpn11-PA - The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a pr...
309.0 [0..1] [318..1]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLIRSLLM NQNKQATDKL DHPDTSETVN ISSLALLKML RHARSGIPLE VMGLMLGDFV  60
   61 DDYTINVTDV FAMPQSGTSV TVESVDPVYQ TKHMDLLKLV GRTENVVGWY HSHPGFGCWL 120
  121 SSVDVNTQQS FEALHPRAVA VVVDPIQSVK GKVMLDAFRS VNPLNLQIRP LAPTAEPRQT 180
  181 TSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 2o95A
Description: No description for 2o95A was found.

Predicted Domain #2
Region A:
Residues: [184-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGHLTKPSLI SVVHGLGTKY YSLNVAYRMG SNEQKMLMCL NKKSWYDQLN MSTYSELEKK  60
   61 QEEKFKSINK LIAVFNKDID EVKEKPIADK KGKTQEEVKK FGKINAKQQL QMITSSLLND 120
  121 SLCHQLTAMI NAKSMT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle