| Protein: | cku-80 |
| Organism: | Caenorhabditis elegans |
| Length: | 728 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cku-80.
| Description | E-value | Query Range |
Subject Range |
|
|
533.0 | [0..7] | [723..102] |
|
Region A: Residues: [1-614] |
1 11 21 31 41 51
| | | | | |
1 MPPKKVSPGI TVILIDAGSN MSVKDTETGK SAFENAINAA DWIVSRKLFS KDPELFSVMA 60
61 YNLDPKEYKT EVGGQTFNGV QCQNEKFTPA SFDHLKFITK ELQQNTEMID PNFFKGVLGA 120
121 VAVLKDQIES YPNPSGITLI VLTNGLNENI RQENFDLLVE AVSESNADLM IIGIDENPEY 180
181 PASRVAELAE TLEGRTYTFQ NVAKMLSTFQ ARQKSERKYN KMWDIAPGIH LPVIFALKSE 240
241 KSTALLKFKN ADSEGNEMVR LEQMHVETDE VAPKDEFKSP VLEEKPKFQK NFKPVENIKT 300
301 MHGSEILNFL KSIINASGYN FGKSVIMMDP EYLKEKYNDH NFNEGQTGGV LKLIQFTKRA 360
361 NILDSYLLDA SAKTVLPALN SPKSGATKAT VSLIEAMLSL RVAAICRYTF HAKSHVQLIA 420
421 LLPHQDEETG VFYLRSVKLP FSDDMRTLKF PKFSFDEEDE DLNKPTVAQL SAVDDLIDCM 480
481 QLQEDEISSL VEGGMSDPKL QMQCHFLKSL VLHPNDTFEN HSNRTNQILD QIMAPKRRVE 540
541 AEHPEIFQKL GREFNLQPIQ KTKRERVTVE PEDLQTMISE WTEKKQNMTQ PDEVDDGASQ 600
601 KKKKKPNAKK LTRK
|
| Detection Method: |  |
| Confidence: | 95.522879 |
| Match: | 1jeqA |
| Description: | DNA binding C-terminal domain of ku70; Ku70 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0650247416983729 | bayes_pls_golite062009 |
|
Region A: Residues: [615-728] |
1 11 21 31 41 51
| | | | | |
1 EEVQMDIMED GGASRVCSKI LEMISNTCKF QPNGAVTEFF TLLVNELNVI RSVFVENSKC 60
61 DEFNELLKKL KDEEDFEPFA EVLSEEKSCN PIDSSEVSMS EVSVANAAEF WEED
|
| Detection Method: | |
| Confidence: | 37.69897 |
| Match: | 1rw2A |
| Description: | Three-dimensional structure of Ku80 CTD |
Matching Structure (courtesy of the PDB): |
|
