YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pcp-5
Organism: Caenorhabditis elegans
Length: 507 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcp-5.

Description E-value Query
Range
Subject
Range
pcp-5 - status:Partially_confirmed UniProt:P34676 protein_id:AAL11487.1
441.0 [0..1] [507..62]

Back

Predicted Domain #1
Region A:
Residues: [1-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFISLAIL IATTHCLTLL RDPVTQNGAS KFEKSIGKYK YEEGYLKAPI DPFAFTNDLE  60
   61 FDLRYFLNID HYETGGPILF YTGNEGSLEA FAENTGFMWD LAPELKAAVV FVEHRFYGKS 120
  121 QPFKNESYTD IRHLGYLSSQ QALADFALSV QFFKNEKIKG AQKSAVIAFG GSYGGMLSAW 180
  181 FRIKYPHIVD GAIAASAPVF WFTDSNIPED VYDFIVTRAF LDAGCNRKAI EKGWIALDEL 240
  241 AKSDSGRQYL NVLYKLDPKS KLENKDDIGF LKQYIRESME AMAMVNYPYP TSFLSSLPAW 300
  301 PVKEACKSAS QPGKTQEESA EQLYKIVNLY YNYTGDKSTH CANAAKCD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1qtrA
Description: Proline aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.13500795029724 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.560001331598537 bayes_pls_golite062009
peptidase activity 0.49210021845334 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.204622919291197 bayes_pls_golite062009
structural molecule activity 0.151914509834157 bayes_pls_golite062009
binding 0.112743564301567 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [349-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAYGSLGDPL GWPFQTCTEM VMPLCGSGYP NDFFWKDCPF TSEKYAEFCM QTFSSIHYNK  60
   61 TLLRPLAGGL AFGATSLPSA SNIVFSNGYL DPWSGGGYDH SDKVQGSVIS VILKQGAHHY 120
  121 DLRGAHPQDT EEVKKVRAME TQAIKKWIKE KARNSWRYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle